Index

_

__abc_tpflags__ (chimcla.stage_2a_bar_selection.ExtendedSqliteDict attribute) __abs__() (chimcla.stage_2a_bar_selection.Attr_Array method) __add__() (chimcla.stage_2a_bar_selection.Attr_Array method) (chimcla.util_file_sorting.Lot method) __all__ (in module chimcla) __and__() (chimcla.stage_2a_bar_selection.Attr_Array method) __array__() (chimcla.stage_2a_bar_selection.Attr_Array method) __array_wrap__() (chimcla.stage_2a_bar_selection.Attr_Array method) __bool__() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) __class_getitem__ (chimcla.stage_2a_bar_selection.ExtendedSqliteDict attribute) __class_getitem__() (chimcla.stage_2a_bar_selection.Attr_Array class method) __contains__() (chimcla.stage_2a_bar_selection.Attr_Array method) (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) (chimcla.util_file_sorting.Lot method) __copy__() (chimcla.stage_2a_bar_selection.Attr_Array method) (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) __deepcopy__() (chimcla.stage_2a_bar_selection.Attr_Array method) (chimcla.util_file_sorting.Lot method) __del__() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) __delattr__() (chimcla.stage_2a_bar_selection.InconsistentAngle method) (chimcla.stage_2a_bar_selection.MissingBoundingBoxes method) (chimcla.util_file_sorting.Lot method) __delitem__() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) (chimcla.util_file_sorting.Lot method) __dir__() (chimcla.stage_2a_bar_selection.InconsistentAngle method) (chimcla.stage_2a_bar_selection.MissingBoundingBoxes method) (chimcla.util_file_sorting.Lot method) __divmod__() (chimcla.stage_2a_bar_selection.Attr_Array method) __enter__() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) __eq__() (chimcla.stage_2a_bar_selection.Attr_Array method) (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) (chimcla.stage_2a_bar_selection.InconsistentAngle method) (chimcla.stage_2a_bar_selection.MissingBoundingBoxes method) (chimcla.util_file_sorting.Lot method) __exit__() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) __float__() (chimcla.stage_2a_bar_selection.Attr_Array method) __floordiv__() (chimcla.stage_2a_bar_selection.Attr_Array method) __format__() (chimcla.stage_2a_bar_selection.InconsistentAngle method) (chimcla.stage_2a_bar_selection.MissingBoundingBoxes method) (chimcla.util_file_sorting.Lot method) __ge__() (chimcla.stage_2a_bar_selection.Attr_Array method) (chimcla.stage_2a_bar_selection.InconsistentAngle method) (chimcla.stage_2a_bar_selection.MissingBoundingBoxes method) (chimcla.util_file_sorting.Lot method) __getattr__() (chimcla.util_file_sorting.Lot method) __getattribute__() (chimcla.stage_2a_bar_selection.InconsistentAngle method) (chimcla.stage_2a_bar_selection.MissingBoundingBoxes method) (chimcla.util_file_sorting.Lot method) __getitem__() (chimcla.stage_2a_bar_selection.Attr_Array method) (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) (chimcla.util_file_sorting.Lot method) __getnewargs__() (chimcla.util_file_sorting.Lot method) __getstate__() (chimcla.stage_2a_bar_selection.InconsistentAngle method) (chimcla.stage_2a_bar_selection.MissingBoundingBoxes method) (chimcla.util_file_sorting.Lot method) __gt__() (chimcla.stage_2a_bar_selection.Attr_Array method) (chimcla.stage_2a_bar_selection.InconsistentAngle method) (chimcla.stage_2a_bar_selection.MissingBoundingBoxes method) (chimcla.util_file_sorting.Lot method) __hash__() (chimcla.stage_2a_bar_selection.InconsistentAngle method) (chimcla.stage_2a_bar_selection.MissingBoundingBoxes method) __iadd__() (chimcla.stage_2a_bar_selection.Attr_Array method) __iand__() (chimcla.stage_2a_bar_selection.Attr_Array method) __ifloordiv__() (chimcla.stage_2a_bar_selection.Attr_Array method) __ilshift__() (chimcla.stage_2a_bar_selection.Attr_Array method) __imod__() (chimcla.stage_2a_bar_selection.Attr_Array method) __imul__() (chimcla.stage_2a_bar_selection.Attr_Array method) __int__() (chimcla.stage_2a_bar_selection.Attr_Array method) __invert__() (chimcla.stage_2a_bar_selection.Attr_Array method) __ior__() (chimcla.stage_2a_bar_selection.Attr_Array method) (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) (chimcla.util_file_sorting.Lot method) __ipow__() (chimcla.stage_2a_bar_selection.Attr_Array method) __irshift__() (chimcla.stage_2a_bar_selection.Attr_Array method) __isub__() (chimcla.stage_2a_bar_selection.Attr_Array method) __iter__() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) (chimcla.util_file_sorting.Lot method) __itruediv__() (chimcla.stage_2a_bar_selection.Attr_Array method) __ixor__() (chimcla.stage_2a_bar_selection.Attr_Array method) __le__() (chimcla.stage_2a_bar_selection.Attr_Array method) (chimcla.stage_2a_bar_selection.InconsistentAngle method) (chimcla.stage_2a_bar_selection.MissingBoundingBoxes method) (chimcla.util_file_sorting.Lot method) __len__() (chimcla.stage_2a_bar_selection.Attr_Array method) (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) (chimcla.util_file_sorting.Lot method) __lshift__() (chimcla.stage_2a_bar_selection.Attr_Array method)

__lt__() (chimcla.stage_2a_bar_selection.Attr_Array method) (chimcla.stage_2a_bar_selection.InconsistentAngle method) (chimcla.stage_2a_bar_selection.MissingBoundingBoxes method) (chimcla.util_file_sorting.Lot method) __marker (chimcla.stage_2a_bar_selection.ExtendedSqliteDict attribute) __matmul__() (chimcla.stage_2a_bar_selection.Attr_Array method) __missing__() (chimcla.util_file_sorting.Lot method) __mod__() (chimcla.stage_2a_bar_selection.Attr_Array method) __mul__() (chimcla.stage_2a_bar_selection.Attr_Array method) __ne__() (chimcla.stage_2a_bar_selection.Attr_Array method) (chimcla.stage_2a_bar_selection.InconsistentAngle method) (chimcla.stage_2a_bar_selection.MissingBoundingBoxes method) (chimcla.util_file_sorting.Lot method) __neg__() (chimcla.stage_2a_bar_selection.Attr_Array method) __new__() (chimcla.stage_2a_bar_selection.Attr_Array method) (chimcla.stage_2a_bar_selection.InconsistentAngle method) (chimcla.stage_2a_bar_selection.MissingBoundingBoxes method) (chimcla.util_file_sorting.Lot method) __or__() (chimcla.stage_2a_bar_selection.Attr_Array method) (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) (chimcla.util_file_sorting.Lot method) __pos__() (chimcla.stage_2a_bar_selection.Attr_Array method) __pow__() (chimcla.stage_2a_bar_selection.Attr_Array method) __reduce__() (chimcla.stage_2a_bar_selection.InconsistentAngle method) (chimcla.stage_2a_bar_selection.MissingBoundingBoxes method) (chimcla.util_file_sorting.Lot method) __reduce_ex__() (chimcla.stage_2a_bar_selection.InconsistentAngle method) (chimcla.stage_2a_bar_selection.MissingBoundingBoxes method) (chimcla.util_file_sorting.Lot method) __repr__() (chimcla.stage_2a_bar_selection.Attr_Array method) (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) (chimcla.stage_2a_bar_selection.InconsistentAngle method) (chimcla.stage_2a_bar_selection.MissingBoundingBoxes method) (chimcla.util.ImageInfoContainer method) (chimcla.util_file_sorting.Lot method) __reversed__ (chimcla.stage_2a_bar_selection.ExtendedSqliteDict attribute) __reversed__() (chimcla.util_file_sorting.Lot method) __ror__() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) (chimcla.util_file_sorting.Lot method) __rshift__() (chimcla.stage_2a_bar_selection.Attr_Array method) __setattr__() (chimcla.stage_2a_bar_selection.InconsistentAngle method) (chimcla.stage_2a_bar_selection.MissingBoundingBoxes method) (chimcla.util_file_sorting.Lot method) __setitem__() (chimcla.stage_2a_bar_selection.Attr_Array method) (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) (chimcla.util_file_sorting.Lot method) __setstate__() (chimcla.stage_2a_bar_selection.InconsistentAngle method) (chimcla.stage_2a_bar_selection.MissingBoundingBoxes method) (chimcla.util_file_sorting.Lot method) __sizeof__() (chimcla.stage_2a_bar_selection.InconsistentAngle method) (chimcla.stage_2a_bar_selection.MissingBoundingBoxes method) (chimcla.util_file_sorting.Lot method) __slots__ (chimcla.stage_2a_bar_selection.ExtendedSqliteDict attribute) __str__() (chimcla.stage_2a_bar_selection.Attr_Array method) (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) (chimcla.stage_2a_bar_selection.InconsistentAngle method) (chimcla.stage_2a_bar_selection.MissingBoundingBoxes method) (chimcla.util_file_sorting.Lot method) __sub__() (chimcla.stage_2a_bar_selection.Attr_Array method) __subclasshook__() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict class method) (chimcla.stage_2a_bar_selection.InconsistentAngle method) (chimcla.stage_2a_bar_selection.MissingBoundingBoxes method) (chimcla.util_file_sorting.Lot method) __truediv__() (chimcla.stage_2a_bar_selection.Attr_Array method) __version__ (in module chimcla.release) __xor__() (chimcla.stage_2a_bar_selection.Attr_Array method) _create_combined_image() (chimcla.util_step_history_from_logfile.MainManager method) _create_combined_image_csv() (chimcla.util_step_history_from_logfile.MainManager method) _EMPTY_SLOT_REF_IMG_PATH (in module chimcla.stage_1a_preprocessing) _EMPTY_SLOT_REF_IMG_ROI (in module chimcla.stage_1a_preprocessing) _fig_to_array() (chimcla.util_step_history_from_logfile.MainManager method) _get_corrected_cell() (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer method) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer method) _get_correlation() (chimcla.stage_1a_preprocessing.Stage1Preprocessor method) _get_fpath_container_from_path_list() (in module chimcla.util_step_history_from_logfile) _get_lower_edge() (chimcla.stage_1a_preprocessing.Stage1Preprocessor static method) _get_original_file() (chimcla.util_step_history_from_logfile.MainManager method) _get_relevant_images() (chimcla.util_step_history_from_logfile.MainManager method) _get_result_dir_from_suffix() (chimcla.stage_2a_bar_selection.HistEvaluation static method) _hook() (chimcla.util_file_sorting.Lot class method) _lightness_curve_of_y() (chimcla.stage_1a_preprocessing.Stage1Preprocessor static method) _new_conn() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) _plot_cell_analysis_image() (chimcla.stage_2a_bar_selection.HistEvaluation method) _plot_cell_analysis_image__paper() (chimcla.stage_2a_bar_selection.HistEvaluation method) _plot_cell_annotation_data_image() (chimcla.stage_2a_bar_selection.HistEvaluation method) _rename_cell_imgs() (in module chimcla.cli) _resize_for_comparison() (chimcla.stage_1a_preprocessing.Stage1Preprocessor method) _rotate_img() (in module chimcla.stage_2a_bar_selection)

A

aa (in module chimcla.stage_2a_bar_selection) adapt_rotation_and_margin() (in module chimcla.stage_2a_bar_selection) add_note() (chimcla.stage_2a_bar_selection.InconsistentAngle method) (chimcla.stage_2a_bar_selection.MissingBoundingBoxes method) add_padding() (in module chimcla.stage_2a_bar_selection) aio_main() (in module chimcla.stage_2b_bar_C0_hist_dict) (in module chimcla.stage_3a_hist_based_classification) (in module chimcla.stage_3b_hist_area_based_classification) (in module chimcla.stage_3d_create_experimental_data) all() (chimcla.stage_2a_bar_selection.Attr_Array method) analyze_img_fpath() (in module chimcla.stage_2a_bar_selection)

AngleAnalyzer (class in chimcla.stage_2a_bar_selection) any() (chimcla.stage_2a_bar_selection.Attr_Array method) argmax() (chimcla.stage_2a_bar_selection.Attr_Array method) argmin() (chimcla.stage_2a_bar_selection.Attr_Array method) argpartition() (chimcla.stage_2a_bar_selection.Attr_Array method) argsort() (chimcla.stage_2a_bar_selection.Attr_Array method) assign_row_col() (in module chimcla.stage_2a1_bar_selection_new) (in module chimcla.stage_2a_bar_selection) astype() (chimcla.stage_2a_bar_selection.Attr_Array method) async_main (in module chimcla.asyncio_tools) async_run() (in module chimcla.asyncio_tools) Attr_Array (class in chimcla.stage_2a_bar_selection)

B

background() (in module chimcla.asyncio_tools) (in module chimcla.stage_0f_resize_and_jpg) (in module chimcla.stage_2a_bar_selection) BAR_THRESHOLD (in module chimcla.stage_2a_bar_selection) BBOX_COLS (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer attribute) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer attribute) BBOX_EXPECTED_DX (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer attribute) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer attribute) BBOX_EXPECTED_DY (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer attribute) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer attribute) BBOX_EXPECTED_HEIGHT (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer attribute) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer attribute) (in module chimcla.stage_2a_bar_selection) BBOX_EXPECTED_WITH (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer attribute) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer attribute) (in module chimcla.stage_2a_bar_selection)

BBOX_MIN_WITH (in module chimcla.stage_2a_bar_selection) BBOX_NUMBER (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer attribute) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer attribute) BBOX_ROWS (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer attribute) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer attribute) BBOX_TOL (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer attribute) (in module chimcla.stage_2a_bar_selection) bgr_convert() (in module chimcla.util) bgreen() (in module chimcla.stage_2a_bar_selection) bred() (in module chimcla.stage_2a_bar_selection) bright() (in module chimcla.stage_2a_bar_selection) build_parser() (in module chimcla.cli) byteswap() (chimcla.stage_2a_bar_selection.Attr_Array method)

C

CavityCarrierImageAnalyzer (class in chimcla.stage_2a1_bar_selection_new) (class in chimcla.stage_2a_bar_selection) CavityCarrierImageAnalyzier (in module chimcla.stage_2a_bar_selection) CELL_KEY_END (in module chimcla.stage_2a_bar_selection) (in module chimcla.stage_3a_hist_based_classification) cell_keys (in module chimcla.stage_2a_bar_selection) (in module chimcla.stage_3a_hist_based_classification) cell_tups (in module chimcla.stage_2b_bar_C0_hist_dict) check_date() (in module chimcla.log_time_filter) check_offset() (chimcla.stage_2a_bar_selection.AngleAnalyzer method) chimcla module chimcla.asyncio_tools module chimcla.aux_rename_cell_imgs module chimcla.cli module chimcla.log_time_filter module chimcla.release module chimcla.stage_0f_resize_and_jpg module chimcla.stage_1a_preprocessing module chimcla.stage_2a1_bar_selection_new module chimcla.stage_2a_bar_selection module chimcla.stage_2b_bar_C0_hist_dict module chimcla.stage_2c_hist_based_anomaly_detection module chimcla.stage_3a_hist_based_classification module chimcla.stage_3b_hist_area_based_classification module chimcla.stage_3c_create_file_names module chimcla.stage_3d_create_experimental_data module chimcla.stage_3e_create_experimental_data_csv module

chimcla.util module chimcla.util_doc module chimcla.util_file_sorting module chimcla.util_img module chimcla.util_sort_into_folder module chimcla.util_step_history_from_logfile module CHIMCLA_DATA (in module chimcla.util) CHIMCLA_DATA_INDICATOR_FNAME (in module chimcla.stage_1a_preprocessing) CHIMCLA_ROOT (in module chimcla.util) choose() (chimcla.stage_2a_bar_selection.Attr_Array method) clear() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) (chimcla.util_file_sorting.Lot method) clip() (chimcla.stage_2a_bar_selection.Attr_Array method) close() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) colors (in module chimcla.stage_2a_bar_selection) commit() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) compress() (chimcla.stage_2a_bar_selection.Attr_Array method) conj() (chimcla.stage_2a_bar_selection.Attr_Array method) conjugate() (chimcla.stage_2a_bar_selection.Attr_Array method) Container (class in chimcla.util_step_history_from_logfile) continuously_build_docs() (in module chimcla.util_doc) convert_to_dict() (in module chimcla.stage_2a_bar_selection) copy() (chimcla.stage_2a_bar_selection.Attr_Array method) (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) (chimcla.util_file_sorting.Lot method) copy_original_image_to_output_folder() (chimcla.stage_2a_bar_selection.HistEvaluation method) correct_angle() (in module chimcla.stage_2a_bar_selection) create_db_with_filenames() (chimcla.util_step_history_from_logfile.MainManager method) create_feature_dirs() (in module chimcla.stage_3c_create_file_names) create_groups() (in module chimcla.cli) create_json_data() (in module chimcla.stage_3c_create_file_names) create_position_time_images() (chimcla.util_step_history_from_logfile.MainManager method) create_stats() (in module chimcla.stage_3c_create_file_names) create_symlink() (chimcla.stage_2a_bar_selection.HistEvaluation method) CRIT_PIX_THRESHOLD (in module chimcla.stage_2a_bar_selection) CS_LIMIT (chimcla.stage_2a_bar_selection.HistEvaluation attribute) cumprod() (chimcla.stage_2a_bar_selection.Attr_Array method) cumsum() (chimcla.stage_2a_bar_selection.Attr_Array method)

D

DATA_DIR (in module chimcla.stage_2a_bar_selection) db (in module chimcla.stage_2a_bar_selection) debug_step02_async_experiments() (chimcla.stage_1a_preprocessing.Stage1Preprocessor method) deepcopy() (chimcla.util_file_sorting.Lot method) DELTA_THRESHOLDS (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer attribute) detrend_upper_row() (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer method) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer method) df_csv (in module chimcla.util_step_history_from_logfile) diagonal() (chimcla.stage_2a_bar_selection.Attr_Array method)

dict_dir (in module chimcla.stage_2b_bar_C0_hist_dict) (in module chimcla.stage_3a_hist_based_classification) (in module chimcla.stage_3b_hist_area_based_classification) diff_to_days() (in module chimcla.util_file_sorting) dispatch() (chimcla.util_doc.DocumentationGenerator method) do_work() (in module chimcla.stage_0f_resize_and_jpg) DocumentationGenerator (class in chimcla.util_doc) dot() (chimcla.stage_2a_bar_selection.Attr_Array method) dump() (chimcla.stage_2a_bar_selection.Attr_Array method) dumps() (chimcla.stage_2a_bar_selection.Attr_Array method)

E

END (in module chimcla.stage_2b_bar_C0_hist_dict) ERROR_CMDS (in module chimcla.stage_3a_hist_based_classification) (in module chimcla.stage_3b_hist_area_based_classification) (in module chimcla.stage_3c_create_file_names) (in module chimcla.stage_3e_create_experimental_data_csv) estimate_angle_for_cell() (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer method) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer method)

evaluate_cell() (chimcla.stage_2a_bar_selection.HistEvaluation method) exclude_cell_keys (in module chimcla.stage_3a_hist_based_classification) (in module chimcla.stage_3b_hist_area_based_classification) (in module chimcla.stage_3c_create_file_names) (in module chimcla.stage_3e_create_experimental_data_csv) ExtendedSqliteDict (class in chimcla.stage_2a_bar_selection)

F

false_positive_correction() (chimcla.stage_2a_bar_selection.HistEvaluation method) FILE_NAME (in module chimcla.util_doc) fill() (chimcla.stage_2a_bar_selection.Attr_Array method) fill_corners_dict() (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer method) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer method) find_bbox_border() (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer method) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer method) find_cell_corners() (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer method) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer method) find_critical_cells() (chimcla.stage_2a_bar_selection.HistEvaluation method) find_critical_cells_for_hist_dict() (chimcla.stage_2a_bar_selection.HistEvaluation method) find_critical_cells_for_hist_dict_path() (chimcla.stage_2a_bar_selection.HistEvaluation method)

find_critical_cells_for_img() (chimcla.stage_2a_bar_selection.HistEvaluation method) find_missing_boxes() (in module chimcla.stage_2a1_bar_selection_new) (in module chimcla.stage_2a_bar_selection) fit_curves() (chimcla.stage_2a_bar_selection.AngleAnalyzer method) fit_sequence2() (chimcla.stage_2a_bar_selection.Fitter method) fit_sequence3() (chimcla.stage_2a_bar_selection.Fitter method) Fitter (class in chimcla.stage_2a_bar_selection) flatten() (chimcla.stage_2a_bar_selection.Attr_Array method) fname_to_date_str() (in module chimcla.util_file_sorting) fp_correct_for_cell() (chimcla.stage_2a_bar_selection.HistEvaluation method) freeze() (chimcla.util_file_sorting.Lot method) fromkeys() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict class method)

G

gaussian_kernel() (in module chimcla.stage_2a_bar_selection) gaussian_smooth() (in module chimcla.stage_2a_bar_selection) generate_criticality_list() (in module chimcla.stage_3d_create_experimental_data) generate_csv() (in module chimcla.stage_3e_create_experimental_data_csv) generate_diagram() (in module chimcla.stage_3e_create_experimental_data_csv) generate_module_docs() (in module chimcla.util_doc) get() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) (chimcla.util_file_sorting.Lot method) get_all_files_for_basename() (in module chimcla.stage_3e_create_experimental_data_csv) get_angle() (in module chimcla.stage_2a_bar_selection) get_angle_from_cell() (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer method) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer method) get_angle_from_hough() (in module chimcla.stage_2a_bar_selection) get_angle_from_moments() (in module chimcla.stage_2a_bar_selection) get_angle_offset_for_img() (chimcla.stage_2a_bar_selection.AngleAnalyzer method) get_angle_offset_for_img2() (chimcla.stage_2a_bar_selection.AngleAnalyzer method) get_base_names_in_dir() (in module chimcla.stage_3e_create_experimental_data_csv) get_bbox_based_angle() (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer method) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer method) get_bbox_for_cell() (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer method) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer method) (chimcla.stage_2a_bar_selection.HistEvaluation method) get_bbox_list() (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer method) (in module chimcla.stage_2a_bar_selection) get_bbox_list_robust() (in module chimcla.stage_2a_bar_selection) get_border_columns() (in module chimcla.stage_2a_bar_selection) get_cell_key_from_fpath() (in module chimcla.stage_2a_bar_selection) get_corrected_cell() (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer method) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer method) (chimcla.stage_2a_bar_selection.HistEvaluation method) get_critical_pixel_info() (chimcla.stage_2a_bar_selection.HistEvaluation method) get_criticality_score() (chimcla.stage_2a_bar_selection.HistEvaluation method) get_criticality_summary() (chimcla.stage_2a_bar_selection.HistEvaluation method) get_data_base_dir() (chimcla.stage_1a_preprocessing.Stage1Preprocessor method)

get_dirname() (in module chimcla.stage_3c_create_file_names) get_error_report() (chimcla.stage_1a_preprocessing.Stage1Preprocessor method) get_guessed_bbox_roi() (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer method) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer method) get_hist_for_cell_pict() (in module chimcla.stage_2a_bar_selection) get_horizontal_line() (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer method) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer method) get_img_and_bbox_list() (in module chimcla.stage_2a_bar_selection) get_img_filenames_from_dir() (in module chimcla.util_step_history_from_logfile) get_img_filenames_from_file() (in module chimcla.util_step_history_from_logfile) get_img_filenames_from_logfile() (in module chimcla.util_step_history_from_logfile) get_img_for_empty_slot_comp() (chimcla.stage_1a_preprocessing.Stage1Preprocessor method) get_img_list() (in module chimcla.stage_2a_bar_selection) (in module chimcla.stage_2b_bar_C0_hist_dict) (in module chimcla.stage_3a_hist_based_classification) get_img_list_from_src_dir() (in module chimcla.stage_3d_create_experimental_data) get_known_critical_images() (in module chimcla.stage_3d_create_experimental_data) get_lightness_distribution_ido_y() (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer method) get_number_of_lines() (in module chimcla.util_doc) get_original_image_fpath() (in module chimcla.stage_2a_bar_selection) get_png_or_jpg_list() (in module chimcla.util) get_position_time_vector() (chimcla.util_step_history_from_logfile.TimeDeltaManager method) get_quantiles() (chimcla.stage_2a_bar_selection.HistEvaluation method) get_raw_cell() (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer method) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer method) (in module chimcla.stage_2a_bar_selection) get_relevant_lines() (in module chimcla.util_step_history_from_logfile) get_result_files() (chimcla.stage_2a_bar_selection.HistEvaluation static method) get_symlog_hist() (in module chimcla.stage_2a_bar_selection) get_symlog_hist_from_cell() (in module chimcla.stage_2a_bar_selection) get_tablenames() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict static method) get_test_column_idcs() (in module chimcla.stage_2a_bar_selection) get_wrapped_quoted_docstring() (in module chimcla.util_doc) getfield() (chimcla.stage_2a_bar_selection.Attr_Array method)

H

handle_csv_mode() (chimcla.util_step_history_from_logfile.MainManager method) handle_csv_mode_count_value() (chimcla.util_step_history_from_logfile.MainManager method) handle_error() (in module chimcla.util) handle_missing_box() (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer method) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer method)

handle_missing_boxes() (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer method) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer method) (in module chimcla.stage_2a_bar_selection) highlight_cell() (chimcla.stage_2a_bar_selection.HistEvaluation static method) hist_dict_path (chimcla.stage_2a_bar_selection.HistEvaluation attribute) HistEvaluation (class in chimcla.stage_2a_bar_selection)

I

ignore_cell_on_experimental_img() (chimcla.stage_2a_bar_selection.HistEvaluation method) ImageInfoContainer (class in chimcla.util) img_bbox_cache (in module chimcla.stage_2a1_bar_selection_new) (in module chimcla.stage_2a_bar_selection) InconsistentAngle InconsistentAngle.__cause__ (class in chimcla.stage_2a_bar_selection) InconsistentAngle.__context__ (class in chimcla.stage_2a_bar_selection) InconsistentAngle.__suppress_context__ (class in chimcla.stage_2a_bar_selection) InconsistentAngle.__traceback__ (class in chimcla.stage_2a_bar_selection) InconsistentAngle.args (class in chimcla.stage_2a_bar_selection)

index_combinations() (in module chimcla.stage_2a1_bar_selection_new) (in module chimcla.stage_2a_bar_selection) initialize_hist_cache() (chimcla.stage_2a_bar_selection.HistEvaluation method) item() (chimcla.stage_2a_bar_selection.Attr_Array method) items() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) (chimcla.util_file_sorting.Lot method) itemset() (chimcla.stage_2a_bar_selection.Attr_Array method) iteritems() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) iterkeys() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) itervalues() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method)

K

keys() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) (chimcla.util_file_sorting.Lot method)

L

line_cache (in module chimcla.util_step_history_from_logfile) load_data() (chimcla.stage_2a_bar_selection.AngleAnalyzer method) load_img() (in module chimcla.stage_2a_bar_selection) (in module chimcla.util_img)

load_lines() (in module chimcla.log_time_filter) (in module chimcla.util_step_history_from_logfile) load_logfile() (chimcla.log_time_filter.MainManager method) (chimcla.util_step_history_from_logfile.MainManager method) Lot (class in chimcla.util_file_sorting)

M

main() (chimcla.log_time_filter.MainManager method) (chimcla.stage_1a_preprocessing.Stage1Preprocessor method) (chimcla.util_step_history_from_logfile.MainManager method) (in module chimcla.asyncio_tools) (in module chimcla.aux_rename_cell_imgs) (in module chimcla.cli) (in module chimcla.log_time_filter) (in module chimcla.stage_0f_resize_and_jpg) (in module chimcla.stage_1a_preprocessing) (in module chimcla.stage_2a_bar_selection) (in module chimcla.stage_2b_bar_C0_hist_dict) (in module chimcla.stage_2c_hist_based_anomaly_detection) (in module chimcla.stage_3a_hist_based_classification) (in module chimcla.stage_3b_hist_area_based_classification) (in module chimcla.stage_3c_create_file_names) (in module chimcla.stage_3d_create_experimental_data) (in module chimcla.stage_3e_create_experimental_data_csv) (in module chimcla.util_sort_into_folder) (in module chimcla.util_step_history_from_logfile) main2() (in module chimcla.stage_3d_create_experimental_data) mainloop() (in module chimcla.stage_0f_resize_and_jpg) MainManager (class in chimcla.log_time_filter) (class in chimcla.stage_3d_create_experimental_data) (class in chimcla.util_step_history_from_logfile) make_html_doc() (in module chimcla.util_doc) make_sorted_bbox_list() (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer method) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer method) max() (chimcla.stage_2a_bar_selection.Attr_Array method) mean() (chimcla.stage_2a_bar_selection.Attr_Array method) MID_ROW_Y_LOWER (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer attribute) MID_ROW_Y_UPPER (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer attribute) min() (chimcla.stage_2a_bar_selection.Attr_Array method)

MissingBoundingBoxes MissingBoundingBoxes.__cause__ (class in chimcla.stage_2a_bar_selection) MissingBoundingBoxes.__context__ (class in chimcla.stage_2a_bar_selection) MissingBoundingBoxes.__suppress_context__ (class in chimcla.stage_2a_bar_selection) MissingBoundingBoxes.__traceback__ (class in chimcla.stage_2a_bar_selection) MissingBoundingBoxes.args (class in chimcla.stage_2a_bar_selection) mm (in module chimcla.stage_3d_create_experimental_data) module chimcla chimcla.asyncio_tools chimcla.aux_rename_cell_imgs chimcla.cli chimcla.log_time_filter chimcla.release chimcla.stage_0f_resize_and_jpg chimcla.stage_1a_preprocessing chimcla.stage_2a1_bar_selection_new chimcla.stage_2a_bar_selection chimcla.stage_2b_bar_C0_hist_dict chimcla.stage_2c_hist_based_anomaly_detection chimcla.stage_3a_hist_based_classification chimcla.stage_3b_hist_area_based_classification chimcla.stage_3c_create_file_names chimcla.stage_3d_create_experimental_data chimcla.stage_3e_create_experimental_data_csv chimcla.util chimcla.util_doc chimcla.util_file_sorting chimcla.util_img chimcla.util_sort_into_folder chimcla.util_step_history_from_logfile mpl_draw_rect() (in module chimcla.stage_2a_bar_selection)

N

newbyteorder() (chimcla.stage_2a_bar_selection.Attr_Array method)

nonzero() (chimcla.stage_2a_bar_selection.Attr_Array method)

O

OmnicientManager (class in chimcla.stage_0f_resize_and_jpg) omo (in module chimcla.stage_0f_resize_and_jpg) on_any_event() (chimcla.util_doc.DocumentationGenerator method) on_closed() (chimcla.util_doc.DocumentationGenerator method) on_closed_no_write() (chimcla.util_doc.DocumentationGenerator method)

on_created() (chimcla.util_doc.DocumentationGenerator method) on_deleted() (chimcla.util_doc.DocumentationGenerator method) on_modified() (chimcla.util_doc.DocumentationGenerator method) on_moved() (chimcla.util_doc.DocumentationGenerator method) on_opened() (chimcla.util_doc.DocumentationGenerator method)

P

parse_args() (chimcla.log_time_filter.MainManager method) (chimcla.util_step_history_from_logfile.MainManager method) parser (in module chimcla.stage_2b_bar_C0_hist_dict) (in module chimcla.stage_3a_hist_based_classification) (in module chimcla.stage_3b_hist_area_based_classification) (in module chimcla.stage_3c_create_file_names) (in module chimcla.stage_3e_create_experimental_data_csv) partition() (chimcla.stage_2a_bar_selection.Attr_Array method) pfname (in module chimcla.stage_2a_bar_selection) piecewise_linear2() (in module chimcla.stage_2a_bar_selection) piecewise_linear3() (in module chimcla.stage_2a_bar_selection) pipeline() (chimcla.stage_1a_preprocessing.Stage1Preprocessor method) (chimcla.stage_2a1_bar_selection_new.Stage2Preprocessor method) (in module chimcla.cli) pjoin (in module chimcla.stage_1a_preprocessing) (in module chimcla.stage_2a1_bar_selection_new) (in module chimcla.util) plot_histogram_of_time_deltas() (in module chimcla.util_step_history_from_logfile) plot_statistics__paper() (in module chimcla.stage_3d_create_experimental_data) pop() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) (chimcla.util_file_sorting.Lot method)

popitem() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) (chimcla.util_file_sorting.Lot method) PREFIXES (in module chimcla.stage_3c_create_file_names) PREPROCESS_BORDERS (in module chimcla.stage_2a_bar_selection) preprocess_cell_borders() (chimcla.stage_2a_bar_selection.HistEvaluation method) process_all_dicts() (chimcla.stage_2a_bar_selection.AngleAnalyzer method) process_column() (in module chimcla.stage_2a_bar_selection) process_dict() (chimcla.stage_2a_bar_selection.AngleAnalyzer method) process_img() (in module chimcla.stage_2b_bar_C0_hist_dict) (in module chimcla.stage_3a_hist_based_classification) (in module chimcla.stage_3b_hist_area_based_classification) (in module chimcla.stage_3d_create_experimental_data) prod() (chimcla.stage_2a_bar_selection.Attr_Array method) ptp() (chimcla.stage_2a_bar_selection.Attr_Array method) put() (chimcla.stage_2a_bar_selection.Attr_Array method) (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) put_container() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) put_text() (in module chimcla.stage_2a_bar_selection) pw_err() (chimcla.stage_2a_bar_selection.Fitter method)

R

ravel() (chimcla.stage_2a_bar_selection.Attr_Array method) rename_cell_imgs() (in module chimcla.cli) repeat() (chimcla.stage_2a_bar_selection.Attr_Array method) replace_cell() (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer static method) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer static method) REPO_ROOT (in module chimcla.stage_2a_bar_selection) reset_result_files() (chimcla.stage_2a_bar_selection.HistEvaluation static method) reshape() (chimcla.stage_2a_bar_selection.Attr_Array method) resize() (chimcla.stage_2a_bar_selection.Attr_Array method) rgb() (in module chimcla.stage_2a_bar_selection) (in module chimcla.util_img)

ROI_DX (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer attribute) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer attribute) ROI_DY (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer attribute) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer attribute) rotate_img() (in module chimcla.stage_2a_bar_selection) round() (chimcla.stage_2a_bar_selection.Attr_Array method) run_this_script() (in module chimcla.stage_2b_bar_C0_hist_dict) (in module chimcla.stage_3a_hist_based_classification) (in module chimcla.stage_3b_hist_area_based_classification) (in module chimcla.stage_3d_create_experimental_data)

S

save_and_plot_critical_cell() (chimcla.stage_2a_bar_selection.HistEvaluation method) save_cell_for_experimental_img() (chimcla.stage_2a_bar_selection.HistEvaluation method) save_corrected_cell() (chimcla.stage_2a_bar_selection.HistEvaluation method) save_eval_res() (chimcla.stage_2a_bar_selection.HistEvaluation method) save_experimental_img() (chimcla.stage_2a_bar_selection.HistEvaluation method) save_logfile() (in module chimcla.log_time_filter) searchsorted() (chimcla.stage_2a_bar_selection.Attr_Array method) select_bar_from_file() (in module chimcla.stage_2a_bar_selection) set_var_values() (chimcla.util_file_sorting.Lot method) setdefault() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) (chimcla.util_file_sorting.Lot method) setfield() (chimcla.stage_2a_bar_selection.Attr_Array method) setflags() (chimcla.stage_2a_bar_selection.Attr_Array method) show() (chimcla.stage_2a1_bar_selection_new.CavityCarrierImageAnalyzer method) (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer method)

smart_fit_sequence3() (chimcla.stage_2a_bar_selection.Fitter method) sort() (chimcla.stage_2a_bar_selection.Attr_Array method) split_into_lots() (in module chimcla.util_file_sorting) squeeze() (chimcla.stage_2a_bar_selection.Attr_Array method) Stage1Preprocessor (class in chimcla.stage_1a_preprocessing) Stage2Preprocessor (class in chimcla.stage_2a1_bar_selection_new) std() (chimcla.stage_2a_bar_selection.Attr_Array method) step01_mogrify_1000jpg() (chimcla.stage_1a_preprocessing.Stage1Preprocessor method) step02_empty_slot_detection() (chimcla.stage_1a_preprocessing.Stage1Preprocessor method) step03_cropping() (chimcla.stage_1a_preprocessing.Stage1Preprocessor method) step04_shading_correction() (chimcla.stage_1a_preprocessing.Stage1Preprocessor method) sum() (chimcla.stage_2a_bar_selection.Attr_Array method) swapaxes() (chimcla.stage_2a_bar_selection.Attr_Array method) symlog_transform() (in module chimcla.stage_2a_bar_selection) sync (chimcla.stage_2a_bar_selection.ExtendedSqliteDict attribute)

T

take() (chimcla.stage_2a_bar_selection.Attr_Array method) terminate() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) THRESHOLDS (chimcla.stage_2a_bar_selection.CavityCarrierImageAnalyzer attribute) TimeDeltaManager (class in chimcla.util_step_history_from_logfile) to_dict() (chimcla.util_file_sorting.Lot method) tobytes() (chimcla.stage_2a_bar_selection.Attr_Array method)

tofile() (chimcla.stage_2a_bar_selection.Attr_Array method) tolist() (chimcla.stage_2a_bar_selection.Attr_Array method) tostring() (chimcla.stage_2a_bar_selection.Attr_Array method) total_res_fpath (chimcla.stage_2a_bar_selection.HistEvaluation attribute) trace() (chimcla.stage_2a_bar_selection.Attr_Array method) transpose() (chimcla.stage_2a_bar_selection.Attr_Array method)

U

uk (in module chimcla.stage_2a_bar_selection) unfreeze() (chimcla.util_file_sorting.Lot method) unpack_key() (in module chimcla.stage_2a_bar_selection)

update() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) (chimcla.util_file_sorting.Lot method) update_cell_mappings() (in module chimcla.stage_3d_create_experimental_data)

V

VALID_FLAGS (chimcla.stage_2a_bar_selection.ExtendedSqliteDict attribute) values() (chimcla.stage_2a_bar_selection.ExtendedSqliteDict method) (chimcla.util_file_sorting.Lot method) var() (chimcla.stage_2a_bar_selection.Attr_Array method)

vertical_detrend() (in module chimcla.stage_2a1_bar_selection_new) (in module chimcla.stage_2a_bar_selection) view() (chimcla.stage_2a_bar_selection.Attr_Array method) vv (in module chimcla.stage_2a_bar_selection) (in module chimcla.util_img)

W

with_traceback() (chimcla.stage_2a_bar_selection.InconsistentAngle method) (chimcla.stage_2a_bar_selection.MissingBoundingBoxes method)

Y

yellow() (in module chimcla.stage_2a_bar_selection)